UW MEBI 591B Schedule

10/6/2009 Michal Galdzicki: Overview and Introduction to the Semantic Web

The first day will include an introduction to the seminar and the Semantic Web. (Presentation Autumn 2009: Galdzicki_intro20091006.pdf)

10/13/2009 Maxwell Neal

Webster, G. "Biologists Flirt With Models". Drug Discovery, 2009. (pdf)(FlirtingWithModelsPresentation2009_MNEAL.pdf)

10/20/2009 Wynona Black

Kashyap, V. "From the Bench to the Bedside: The Role of Semantic Web and Translational Medicine for Enabling the Next Generation Healthcare Enterprise," Biomedical Engineering Systems and Technologies, 2009 Springer Berlin Heidelberg.
(pdf)

10/27/2009 Canceled

Away at conference.

11/3/2009 Casey Overby

Momtchev, V., Peychev, D., Primov, T., Georgiev, G. "Expanding the Pathway and Interaction Knowledge in Linked Life Data", 2009. (pdf )

11/10/2009 Paul Fearn

Antezana, E., Egaña, M., Blondé, W., Illarramendi, A., Bilbao, I., De Baets, B., Stevens, R., Mironov, V., and Kuiper, M. "The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process."
Genome Biology 2009 (pdf) (Antezana_CellCycleOntology_P_Fearn.pdf)

11/17/2009 Canceled

AMIA.

11/24/2009 Nolan Nichols

Rubin, D.L., Talos, IF., Halle, M., Musen, M.A. and Kikinis, R. "Computational neuroanatomy: ontology-based representation of neural components and connectivity". BMC Bioinformatics, 2009. (pdf) (Nichols_CompNeuro_Rubin2009.pdf)

12/1/2009 Melissa Clarkson

Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, Matsuoka Y, Villéger A, Boyd SE, Calzone L, Courtot M, Dogrusoz U, Freeman TC, Funahashi A, Ghosh S, Jouraku A, Kim S, Kolpakov F, Luna A, Sahle S, Schmidt E, Watterson S, Wu G, Goryanin I, Kell DB, Sander C, Sauro H, Snoep JL, Kohn K, Kitano H. The Systems Biology Graphical Notation. Nat Biotechnol. 2009 27(8):735-41.
(pdf)

12/8/2009 Marianne Shaw

Luciano, J.S. and Stevens, R.D.
"OWL: PAX of mind or the AX? Experiences of Using OWL in the Development of BioPAX" OWLED 2008 (pdf)


MEBI591B: Semantic Web in Biomedicine
Home Schedule Links Winter09 Spring09 Autumn09 Winter10 Spring10	MEBI 591B, Autumn 2009 Semantic Web in Biomedicine Course Schedule 10/6/2009 Michal Galdzicki: Overview and Introduction to the Semantic Web The first day will include an introduction to the seminar and the Semantic Web. (Presentation Autumn 2009: Galdzicki_intro20091006.pdf) 10/13/2009 Maxwell Neal Webster, G. "Biologists Flirt With Models". Drug Discovery, 2009. (pdf)(FlirtingWithModelsPresentation2009_MNEAL.pdf) 10/20/2009 Wynona Black Kashyap, V. "From the Bench to the Bedside: The Role of Semantic Web and Translational Medicine for Enabling the Next Generation Healthcare Enterprise," Biomedical Engineering Systems and Technologies, 2009 Springer Berlin Heidelberg. (pdf) 10/27/2009 Canceled Away at conference. 11/3/2009 Casey Overby Momtchev, V., Peychev, D., Primov, T., Georgiev, G. "Expanding the Pathway and Interaction Knowledge in Linked Life Data", 2009. (pdf ) 11/10/2009 Paul Fearn Antezana, E., Egaña, M., Blondé, W., Illarramendi, A., Bilbao, I., De Baets, B., Stevens, R., Mironov, V., and Kuiper, M. "The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process." Genome Biology 2009 (pdf) (Antezana_CellCycleOntology_P_Fearn.pdf) 11/17/2009 Canceled AMIA. 11/24/2009 Nolan Nichols Rubin, D.L., Talos, IF., Halle, M., Musen, M.A. and Kikinis, R. "Computational neuroanatomy: ontology-based representation of neural components and connectivity". BMC Bioinformatics, 2009. (pdf) (Nichols_CompNeuro_Rubin2009.pdf) 12/1/2009 Melissa Clarkson Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, Matsuoka Y, Villéger A, Boyd SE, Calzone L, Courtot M, Dogrusoz U, Freeman TC, Funahashi A, Ghosh S, Jouraku A, Kim S, Kolpakov F, Luna A, Sahle S, Schmidt E, Watterson S, Wu G, Goryanin I, Kell DB, Sander C, Sauro H, Snoep JL, Kohn K, Kitano H. The Systems Biology Graphical Notation. Nat Biotechnol. 2009 27(8):735-41. (pdf) 12/8/2009 Marianne Shaw Luciano, J.S. and Stevens, R.D. "OWL: PAX of mind or the AX? Experiences of Using OWL in the Development of BioPAX" OWLED 2008 (pdf)
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