Modeling biomedical assertions in the semantic web
Deendayal Dinakarpandian, Tuanjie Tong, Yugyung Lee (link)

Weaving the Biomedical Semantic Web with the Protege OWL Plugin
Holger Knublauch Olivier Dameron Mark A. Musen (link)

A Semantic Web Management Model for Integrative Biomedical Informatics
Helena F. Deus, Romesh Stanislaus, Diogo F. Veiga, Carmen Behrens, Ignacio I. Wistuba, John D. Minna, Harold R. Garner, Stephen G. Swisher, Jack A. Roth, Arlene M. Correa, Bradley Broom, Kevin Coombes, Allen Chang, Lynn H. Vogel, Jonas S. Almeida (link)

Information retrieval and knowledge discovery utilising a biomedical Semantic Web
Sougata Mukherjea (link)

Knowledge management in biomedical libraries: A semantic web approach Export
Damaris Fuentes-Lorenzo, Jorge Morato, Juan Gomez (link)

The semantic web and biology
Tor-Kristian Jenssen and Eivind Hovig (link)

OWL: PAX of mind or the AX? Experiences of Using OWL in the Development of BioPAX.
Joanne S. Luciano and Robert D. Stevens (link)

Modeling Life Science Knowledge with OWL 1.1
Michel Dumontier, Natalia Villanueva-Rosales (link)

The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process.
Antezana, Egana, Blonde et al. Genome Biology 2009 10:R58 (link)

Strategies for Referent Tracking in Electronic Health Records
aka Did Carl Weiss assasinate Huey Long?
Werner Ceusters, Barry Smith (link)

Proceedings from recent meetings

CEUR Workshop Proceedings (link)

OWL: Experiences and Directions 2008 DC (link)

Semantic Web Applications and Tools for Life Sciences SWAT4LS 2008 (link)