Tuesdays 1:00-1:50pm
Health Sciences Building I-wing (HSI) Room# I-132 Map showing I-wing ;Map of Campus
Dates: 10/6/2009 - 12/8/2009

November 18 2009, 10:32 AM

11/24/2009 Nolan Nichols - "Computational neuroanatomy ontology"

Nolan will lead the discussion based on an article by Daniel Rubin and Ion-Florin Talos presented at Translational AMIA Summit 2008, "Computational neuroanatomy: ontology-based representation of neural components and connectivity". BMC Bioinformatics 2009.

November 3 2009, 4:39 PM

11/10/2009 Paul Fern - "Cell Cycle Ontology

Paul will lead the discussion based on an article by Erick Antezana "The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process" 2009.

November 3 2009, 12:34 AM

11/3/2009 Casey Overby - "Expanding the Pathway and Interaction Knowledge in Linked Life Data" by Momtchev

Casey will lead the discussion based on an article about http://linkedlifedata.com  from http://challenge.semanticweb.org/ by Vassil Momtchev titled, "Expanding the Pathway and Interaction Knowledge in Linked Life Data" 2009

October 16 2009, 12:13 PM

10/20/2009 Wynona Black - "The Role of Semantic Web and Translational Medicine" by Kashyap

Wynona Black will lead the discussion about a chapter from "Biomedical Engineering Systems and Technologies" by Vipul Kashyap titled, "From the Bench to the Bedside: The Role of Semantic Web and Translational Medicine for Enabling the Next Generation Healthcare Enterprise." 2009

October 9 2009, 12:10 PM

10/13/2009 Maxwell Neal - "Biologists Flirt With Models" by Webster

Maxwell Neal will discuss how semantic web technologies
advance biological modeling and simulation, in a discussion based on
the article by G Webster. "Biologists Flirt With Models". Drug
Discovery, 2009

October 4 2009, 8:51 PM

10/6/2009 First Day

Michal Galdzicki will introduce the seminar and the Semantic Web.
We will also decide on the schedule for the journal club, here is a link to a list of possible papers.

October 4 2009, 8:46 PM

Description

The Semantic Web in Biomedicine Seminar will be organized as a journal club focused on semantic technology use in bioinformatics, medical and public health informatics. The journal club will focus on current research articles chosen by the students from diverse publication sources. Each session will be led by one of the attendees in a discussions that will summarize the findings and critique the research. The goal is to get to know some of the many exciting examples of semantic web applications within biomedical and health literature. If you have questions or ideas for specific topics please e-mail me.